STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX22981.1Tagaturonate reductase; PFAM: Mannitol dehydrogenase C-terminal domain. (366 aa)    
Predicted Functional Partners:
APX22982.1
Altronate hydrolase; 'PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain'.
 
 0.995
APX22980.1
'PFAM: Bacterial regulatory proteins, gntR family; FCD domain'.
 
   
 0.788
APX24420.1
(2R)-sulfolactate sulfo-lyase subunit beta; 'PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus'.
  
 0.604
APX24407.1
PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase.
 
  
 0.426
APX22449.1
PTS IIA-like nitrogen-regulatory protein PtsN; 'PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2'.
  
  
 0.425
argB
N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
      
 0.404
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.