STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23002.1PFAM: Binding-protein-dependent transport system inner membrane component; 'TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family'. (219 aa)    
Predicted Functional Partners:
APX23003.1
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter.
 0.997
APX23000.1
Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.
 0.993
APX23001.1
PFAM: Binding-protein-dependent transport system inner membrane component; 'TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family'.
 
  
 
0.981
APX22264.1
Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.
 
 0.979
APX22262.1
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter.
 
 0.908
APX23343.1
Amnio acid ABC transporter ATP-binding protein; PFAM: ABC transporter.
 
 0.908
APX23345.1
PFAM: Binding-protein-dependent transport system inner membrane component; 'TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family'.
 
 
 0.891
APX22014.1
Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.
 
 0.849
APX21585.1
Amino acid ABC transporter substrate-binding protein, PAAT family; 'PFAM: Bacterial extracellular solute-binding proteins, family 3'.
 
 
 0.847
APX23005.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; 'PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family'; Belongs to the LysR transcriptional regulatory family.
 
     0.804
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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