STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23145.1Hypothetical protein; PFAM: Peptidogalycan biosysnthesis/recognition. (399 aa)    
Predicted Functional Partners:
APX23146.1
PFAM: Pterin 4 alpha carbinolamine dehydratase.
  
    0.855
APX23143.1
Putative translation initiation inhibitor, yjgF family; 'PFAM: YjgF/chorismate_mutase-like, putative endoribonuclease'.
       0.759
APX23144.1
PFAM: Glycerophosphoryl diester phosphodiesterase family.
       0.691
bpt
arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
 
     0.678
APX23141.1
ATP-binding cassette, subfamily C; PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: type I secretion system ABC transporter, PrtD family'.
       0.640
APX23142.1
PFAM: HlyD family secretion protein; 'TIGRFAM: type I secretion membrane fusion protein, HlyD family'.
       0.589
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
  
     0.520
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
 
     0.512
APX23139.1
PFAM: MlaA lipoprotein.
       0.491
APX23138.1
Phospholipid transport system substrate-binding protein; PFAM: MlaC protein.
       0.478
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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