STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23167.1PFAM: Acetyltransferase (GNAT) domain. (141 aa)    
Predicted Functional Partners:
APX23169.1
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.786
APX23168.1
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.782
APX23166.1
NitT/TauT family transport system ATP-binding protein; PFAM: ABC transporter.
  
    0.781
APX23165.1
Dihydropyrimidinase; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase.
       0.749
APX23170.1
NitT/TauT family transport system substrate-binding protein; PFAM: NMT1/THI5 like.
       0.680
APX23164.1
N-carbamoyl-L-amino-acid hydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; 'TIGRFAM: amidase, hydantoinase/carbamoylase family'.
  
    0.530
APX22786.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein; 'PFAM: Phosphopantetheine attachment site; Luciferase-like monooxygenase; AMP-binding enzyme; Formyl transferase; Formyl transferase, C-terminal domain; AMP-binding enzyme C-terminal domain'; TIGRFAM: natural product biosynthesis luciferase-like monooxygenase domain.
 
  
 0.478
APX23311.1
PFAM: Putative rhamnosyl transferase.
  
     0.471
APX23713.1
Sortase-like acyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.467
APX24041.1
Hypothetical protein.
  
     0.459
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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