STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23352.1Hypothetical protein; PFAM: Membrane fusogenic activity. (81 aa)    
Predicted Functional Partners:
APX23354.1
Hypothetical protein; PFAM: Putative S-adenosyl-L-methionine-dependent methyltransferase.
 
     0.749
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.715
APX23355.1
Hypothetical protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: YfiH family protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.715
APX23348.1
Chaperone required for the assembly of F1-ATPase; PFAM: ATP12 chaperone protein.
 
     0.682
APX22775.1
Hypothetical protein; PFAM: Bacterial SH3 domain.
  
     0.649
APX24586.1
Ribbon-helix-helix domain-containing protein; PFAM: Ribbon-helix-helix domain.
  
     0.609
APX23448.1
Hypothetical protein; PFAM: Putative bacterial sensory transduction regulator.
 
     0.593
APX24271.1
Cobaltochelatase CobT subunit; PFAM: Cobalamin biosynthesis protein CobT VWA domain; Cobalamin biosynthesis protein CobT; 'TIGRFAM: cobaltochelatase, CobT subunit'.
  
     0.587
APX22267.1
PFAM: GcrA cell cycle regulator.
  
     0.550
APX23350.1
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
     0.543
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.