STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23388.1PFAM: Domain of unknown function (DUF3576). (176 aa)    
Predicted Functional Partners:
APX21444.1
Beta-barrel assembly machine subunit BamF; PFAM: putative DUF3035 protein.
  
     0.767
APX24620.1
Small protein A (tmRNA-binding); PFAM: SmpA / OmlA family.
  
     0.737
APX23387.1
Outer membrane protein OmpU; PFAM: Gram-negative porin.
 
   
 0.733
APX22178.1
PFAM: COQ9; TIGRFAM: rpsU-divergently transcribed protein.
  
     0.689
APX21894.1
Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2.
  
     0.674
leuS
'PFAM: Leucyl-tRNA synthetase, Domain 2; tRNA synthetases class I (I, L, M and V); tRNA synthetases class I (M); Anticodon-binding domain of tRNA'; 'TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family'; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.632
APX22327.1
LPS-assembly lipoprotein; PFAM: Lipopolysaccharide-assembly.
 
     0.614
APX22326.1
'TIGRFAM: DNA polymerase III, delta subunit'.
 
     0.609
APX25259.1
WD40-like repeat protein; PFAM: PQQ-like domain.
  
    0.587
APX24213.1
Hypothetical protein; PFAM: Helix-turn-helix domain; Domain of unknown function (DUF4115).
  
     0.576
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.