STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23743.1PFAM: Ppx/GppA phosphatase family; TIGRFAM: exopolyphosphatase. (518 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.941
APX22134.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
 
 0.938
APX25028.1
PFAM: Ppx/GppA phosphatase family.
  
  
0.933
APX22746.1
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD-like helicase C-terminal domain; PD-(D/E)XK nuclease superfamily; UvrD/REP helicase N-terminal domain; 'TIGRFAM: double-strand break repair helicase AddA, alphaproteobacterial type'; Belongs to the helicase family. UvrD subfamily.
  
     0.639
APX23746.1
PFAM: Bacterial dnaA protein; Belongs to the DnaA family.
     
 0.564
APX23744.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
   0.558
APX23747.1
PFAM: putative DUF20 protein.
       0.549
APX24811.1
PFAM: Polyphosphate kinase 2 (PPK2); 'TIGRFAM: polyphosphate kinase 2, PA0141 family'.
 
  
 0.542
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
    0.528
APX25146.1
PFAM: Polyphosphate kinase 2 (PPK2); 'TIGRFAM: polyphosphate kinase 2, PA0141 family'.
 
  
 0.523
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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