STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX23899.1PFAM: Protein of unknown function (DUF2840). (173 aa)    
Predicted Functional Partners:
APX23900.1
'PFAM: Signal peptidase, peptidase S26'; TIGRFAM: conjugative transfer signal peptidase TraF.
 
     0.947
APX23898.1
PFAM: Replication initiator protein A.
 
     0.944
APX23897.1
Helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix domain.
 
     0.937
APX23901.1
PFAM: putative DUF736 protein.
 
     0.892
APX23903.1
Type IV secretory pathway, VirD2 component (relaxase); PFAM: Protein of unknown function (DUF3363).
     0.816
APX25482.1
Type IV secretory pathway, VirD2 component (relaxase); PFAM: Protein of unknown function (DUF3363).
     0.810
APX25488.1
Helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix domain.
 
     0.788
APX23905.1
CopG domain-containing protein.
 
     0.781
APX25480.1
CopG domain-containing protein.
 
     0.781
APX25485.1
'PFAM: Signal peptidase, peptidase S26'; TIGRFAM: conjugative transfer signal peptidase TraF.
 
     0.776
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.