STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX24388.1Urease accessory protein; PFAM: UreF. (216 aa)    
Predicted Functional Partners:
ureB
'PFAM: Urease beta subunit; Urease, gamma subunit'; 'TIGRFAM: urease, beta subunit; urease, gamma subunit'; Belongs to the urease beta subunit family.
 
 
 0.997
ureC
Urease; 'PFAM: Amidohydrolase family; Urease alpha-subunit, N-terminal domain'; 'TIGRFAM: urease, alpha subunit'.
 
 
 0.958
APX24384.1
PFAM: UreD urease accessory protein.
  
 
 0.950
APX24385.1
Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.948
APX24389.1
'PFAM: UreE urease accessory protein, N-terminal domain'.
  
  
 0.944
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.883
APX23027.1
'PFAM: CobW/HypB/UreG, nucleotide-binding domain'; TIGRFAM: hydrogenase accessory protein HypB.
  
 
 0.807
ureG
Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
  
 
 0.807
ureC-2
Urease; 'PFAM: Amidohydrolase family; Urease alpha-subunit, N-terminal domain'; 'TIGRFAM: urease, alpha subunit'.
  
 
 0.793
ureE
Urease accessory protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
  
  
 0.773
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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