STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX24465.1Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies). (435 aa)    
Predicted Functional Partners:
APX24845.1
Hint domain-containing protein; PFAM: Hint domain.
 
 0.935
APX21333.1
Putative calcium-binding protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
  
 
0.921
APX21522.1
Hint domain-containing protein; PFAM: Hint domain.
 
 
 0.893
APX23142.1
PFAM: HlyD family secretion protein; 'TIGRFAM: type I secretion membrane fusion protein, HlyD family'.
 
  
 0.705
APX23141.1
ATP-binding cassette, subfamily C; PFAM: ABC transporter; ABC transporter transmembrane region; 'TIGRFAM: type I secretion system ABC transporter, PrtD family'.
 
 
 0.657
APX24464.1
PFAM: Lipid A 3-O-deacylase (PagL).
       0.459
APX23218.1
Iron complex outermembrane recepter protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor.
   
 
 0.451
APX22329.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Gkycosyl transferase family 4 group.
 
  
 0.407
APX24104.1
PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
    0.405
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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