STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX25210.1C4-dicarboxylate-binding protein DctP; 'PFAM: Bacterial extracellular solute-binding protein, family 7'; 'TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family'. (336 aa)    
Predicted Functional Partners:
APX25209.1
C4-dicarboxylate transporter, DctQ subunit; 'PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component'.
 
  
 0.908
APX25208.1
'PFAM: Tripartite ATP-independent periplasmic transporter, DctM component'; 'TIGRFAM: TRAP transporter, DctM subunit'.
  
 0.891
APX24134.1
TRAP transporter, DctM subunit; 'PFAM: Tripartite ATP-independent periplasmic transporter, DctM component'; 'TIGRFAM: TRAP transporter, DctM subunit'.
  
 0.682
APX25213.1
Two component, sigma54 specific, transcriptional regulator, Fis family; 'PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain'.
 
     0.631
APX24125.1
TRAP transporter, DctM subunit; 'PFAM: Tripartite ATP-independent periplasmic transporter, DctM component'; 'TIGRFAM: TRAP transporter, DctM subunit'.
  
 0.569
APX25214.1
Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB; 'PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain'.
 
     0.562
APX24964.1
TRAP transporter, DctM subunit; 'PFAM: Tripartite ATP-independent periplasmic transporter, DctM component'; 'TIGRFAM: TRAP transporter, DctM subunit'.
  
 0.551
APX25211.1
Hypothetical protein.
       0.542
APX24971.1
TRAP transporter, DctM subunit; 'PFAM: Tripartite ATP-independent periplasmic transporter, DctM component'; 'TIGRFAM: TRAP transporter, DctM subunit'.
  
 0.527
APX24958.1
TRAP transporter, DctM subunit; 'PFAM: Tripartite ATP-independent periplasmic transporter, DctM component'; 'TIGRFAM: TRAP transporter, DctM subunit'.
  
 0.526
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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