STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX21294.1PFAM: N-acetylmuramoyl-L-alanine amidase. (288 aa)    
Predicted Functional Partners:
APX21290.1
Hypothetical protein.
 
     0.840
APX21306.1
Chromosome partitioning protein, ParB family; PFAM: ParB-like nuclease domain; TIGRFAM: ParB/RepB/Spo0J family partition protein.
 
     0.796
APX21293.1
Hypothetical protein.
     
 0.785
APX21287.1
Hypothetical protein.
       0.768
APX21288.1
Hypothetical protein.
       0.768
APX21289.1
PFAM: putative DUF3486 protein.
       0.768
APX21291.1
PFAM: putative DUF2730 protein.
       0.768
APX21292.1
Hypothetical protein.
       0.768
APX21513.1
PFAM: N-acetylmuramoyl-L-alanine amidase.
  
     0.730
engB
GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.715
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.