STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APX21363.1Cytosine deaminase-like metal-dependent hydrolase; PFAM: Amidohydrolase family. (446 aa)    
Predicted Functional Partners:
APX21362.1
PFAM: Cysteine-rich secretory protein family.
  
    0.727
APX21364.1
PFAM: Inositol monophosphatase family; 'TIGRFAM: histidinol-phosphatase, inositol monophosphatase family'.
       0.620
APX23104.1
5-hydroxyisourate hydrolase; PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.594
APX21361.1
PFAM: Cysteine-rich secretory protein family.
  
    0.517
APX21365.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
       0.488
APX23105.1
Chitin deacetylase; PFAM: OHCU decarboxylase; Polysaccharide deacetylase; TIGRFAM: OHCU decarboxylase; putative urate catabolism protein.
 
   
 0.473
APX23108.1
Nucleobase:cation symporter-2, NCS2 family; PFAM: Permease family; TIGRFAM: uracil-xanthine permease; xanthine permease.
 
  
 0.404
Your Current Organism:
Salipiger profundus
NCBI taxonomy Id: 1229727
Other names: CGMCC 1.12377, DSM 27508 [[Salipiger nanhaiensis]], Donghicola sp. ZH114, JCM 19383 [[Salipiger nanhaiensis]], KCTC 32468 [[Salipiger nanhaiensis]], LMG 27365, LMG:27365, S. profundus, Salipiger nanhaiensis, Salipiger nanhaiensis Dai et al. 2015, Salipiger sp. JLT2016, Thiobacimonas profunda, Thiobacimonas profunda Li et al. 2015 emend. Huang et al. 2017, strain JLT2016, strain ZH114 [[Salipiger nanhaiensis]]
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