STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFT81872.1COG3764 Sortase (surface protein transpeptidase). (277 aa)    
Predicted Functional Partners:
AFT80967.1
Lactoylglutathione lyase related lyase.
  
     0.735
AFT81874.1
Hypothetical protein.
 
     0.712
AFT81458.1
Hypothetical protein.
 
  
 0.671
AFT81730.1
COG0671 Membrane-associated phospholipid phosphatase.
  
     0.664
AFT81055.1
Glycosyltransferase.
  
     0.654
AFT81214.1
FemX; COG2348 Uncharacterized protein involved in methicillin resistance.
 
    0.637
AFT81462.1
COG0608 Single-stranded DNA-specific exonuclease.
     
 0.597
AFT81247.1
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.579
AFT82259.1
COG4858 Uncharacterized membrane-bound protein conserved in bacteria.
  
     0.563
AFT81878.1
Hypothetical protein.
 
     0.546
Your Current Organism:
Leuconostoc carnosum
NCBI taxonomy Id: 1229758
Other names: L. carnosum JB16, Leuconostoc carnosum JB16
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