STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCM65095.1Integrase catalytic region. (368 aa)    
Predicted Functional Partners:
CCM62489.1
Transposase.
 
    0.650
CCM65928.1
Transposase.
 
    0.648
ilvD-2
Fragment of dihydroxyacid dehydratase (part 4); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
    0.602
CCM65721.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.594
CCM62898.1
Hypothetical protein; No homology to any previously reported sequences.
 
     0.556
CCM65094.1
Hypothetical protein; No homology to any previously reported sequences.
       0.554
CCM65451.1
Transposase.
  
     0.548
CCM65197.1
Putative RNA-directed DNA polymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.500
CCM64255.1
Transposase.
 
     0.438
CCM65924.1
Hypothetical protein; No homology to any previously reported sequences.
 
     0.435
Your Current Organism:
Microthrix parvicella
NCBI taxonomy Id: 1229780
Other names: C. Microthrix parvicella RN1, Candidatus Microthrix parvicella RN1, Candidatus Microthrix parvicella str. RN1, Candidatus Microthrix parvicella strain RN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.