STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCM66043.1Putative osmoprotectant uptake system substrate-binding protein osmF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (327 aa)    
Predicted Functional Partners:
CCM66040.1
Putative Glycine betaine transport system permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.998
CCM66042.1
Putative glycine betaine/carnitine/choline ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.998
CCM63892.1
Membrane hypothetical protein; No homology to any previously reported sequences.
 
 0.996
CCM63893.1
Putative Binding-protein-dependent transport systems inner membrane component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.996
opuCA
Glycine betaine/carnitine/choline/choline sulfate ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.981
yehX
Putative transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 0.968
CCM63891.1
Putative Glycine betaine/choline-binding protein of an ABC-type transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 
0.883
CCM62642.1
ABC transporter related protein; Belongs to the ABC transporter superfamily.
   
  0.497
cysA
Sulfate permease A protein, chromate resistance (ABC superfamily, atp_bind); Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
   
  0.497
CCM65293.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 
0.421
Your Current Organism:
Microthrix parvicella
NCBI taxonomy Id: 1229780
Other names: C. Microthrix parvicella RN1, Candidatus Microthrix parvicella RN1, Candidatus Microthrix parvicella str. RN1, Candidatus Microthrix parvicella strain RN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.