STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHK63183.1Uncharacterized protein; Product derived from UniProtKB/Trembl:S7JDL3. (116 aa)    
Predicted Functional Partners:
AHK63184.1
Hypothetical protein.
   
   0.851
gyrB
DNA gyrase subunit B; Product derived from UniProtKB/Swiss-Prot:O84193;Gene name derived from UniProtKB/Swiss-Prot:O84193;EC number derived from UniProtKB/Swiss-Prot:O84193.
   
   0.851
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.790
AHK63188.1
DNA polymerase III, delta subunit; Product derived from UniProtKB/Trembl:S7JE11.
       0.773
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.736
AHK63182.1
Uncharacterized protein; Product derived from UniProtKB/Trembl:S7KV68.
       0.536
Your Current Organism:
Chlamydia avium
NCBI taxonomy Id: 1229831
Other names: C. avium 10DC88, Chlamydia avium 10DC88, Chlamydia sp. 10DC88
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.