STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPNG_01580RBR-type E3 ubiquitin transferase. (961 aa)    
Predicted Functional Partners:
VPNG_04683
Uncharacterized protein.
   
 0.898
VPNG_02380
WD_REPEATS_REGION domain-containing protein.
   
 0.870
VPNG_06352
TFIID_20kDa domain-containing protein.
    
 0.869
VPNG_03327
SCA7 domain-containing protein.
    
 0.869
VPNG_04249
Uncharacterized protein.
    
 0.865
VPNG_05193
Uncharacterized protein.
    
 0.861
VPNG_09888
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.855
VPNG_03121
Uncharacterized protein.
    
 0.855
VPNG_04232
Uncharacterized protein.
    
 0.853
VPNG_02584
TAF domain-containing protein.
    
 0.845
Your Current Organism:
Cytospora leucostoma
NCBI taxonomy Id: 1230097
Other names: C. leucostoma, Leucostoma leucostoma, Leucostoma persoonii, Valsa leucostoma, Valsa persoonii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.