STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTM_17412NAD(FAD)-utilizing dehydrogenase; COG2081 Predicted flavoproteins. (408 aa)    
Predicted Functional Partners:
CTM_17417
COG1832 Predicted CoA-binding protein.
       0.559
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
    0.515
CTM_22671
COG0346 Lactoylglutathione lyase and related lyases.
  
    0.476
CTM_24263
COG0346 Lactoylglutathione lyase and related lyases.
  
    0.476
CTM_06391
Hypothetical protein; COG2509 Uncharacterized FAD-dependent dehydrogenases.
    
  0.408
Your Current Organism:
Clostridium tetanomorphum
NCBI taxonomy Id: 1230342
Other names: C. tetanomorphum DSM 665, Clostridium tetanomorphum DSM 665, Clostridium tetanomorphum NCIMB 11547
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