STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSY001_0894Ribosome assembly protein RRB1. (501 aa)    
Predicted Functional Partners:
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.958
MSY001_2017
Similar to S.cerevisiae protein NEW1 (ATP binding cassette protein).
   
   0.955
MSY001_1855
Similar to S.cerevisiae protein SSF2 (Protein required for ribosomal large subunit maturation).
   
    0.923
MSY001_0427
Similar to S.cerevisiae protein UTP30 (Putative subunit of U3-containing 90S preribosome complex).
   
 
 0.914
MSY001_2051
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
  
 0.886
MSY001_3249
Similar to S.cerevisiae protein NOC2 (Protein involved in ribosome biogenesis).
   
 
 0.884
MSY001_0299
Similar to S.cerevisiae protein ENP1 (Protein associated with U3 and U14 snoRNAs).
   
  
 0.865
HAS1
RNA helicase.
   
   0.864
MSY001_3391
Similar to S.cerevisiae protein PWP1 (Protein with WD-40 repeats involved in rRNA processing).
   
  
0.863
MSY001_1756
Similar to S.cerevisiae protein DBP9 (DEAD-box protein required for 27S rRNA processing).
   
 
 0.858
Your Current Organism:
Malassezia sympodialis
NCBI taxonomy Id: 1230383
Other names: M. sympodialis ATCC 42132, Malassezia sympodialis ATCC 42132
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