STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C453_02769Cysteine desulfurase, class V aminotransferase; COG0520 Selenocysteine lyase. (426 aa)    
Predicted Functional Partners:
C453_02759
Nitrogen fixation protein NifU-like protein; COG0822 NifU homolog involved in Fe-S cluster formation.
 
 0.994
C453_06496
ABC transporter ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.957
C453_06506
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.925
C453_06501
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.922
C453_13031
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.922
C453_05084
Endonuclease/exonuclease/phosphatase family protein.
    
   0.889
C453_07938
COG0492 Thioredoxin reductase.
 
 
  0.867
C453_07388
COG0492 Thioredoxin reductase.
  
 
  0.795
C453_11466
COG0492 Thioredoxin reductase.
  
 
  0.795
C453_16393
Molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; COG0303 Molybdopterin biosynthesis enzyme.
  
 
 0.755
Your Current Organism:
Haloferax elongans
NCBI taxonomy Id: 1230453
Other names: H. elongans ATCC BAA-1513, Haloferax elongans ATCC BAA-1513, Haloferax elongans JCM 14791, Haloferax elongans SA5, Haloferax sp. SA5
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