STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C461_09442COG0463 Glycosyltransferases involved in cell wall biogenesis. (279 aa)    
Predicted Functional Partners:
C461_13876
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
  0.835
C461_00282
Dolichyl-phosphate beta-D-mannosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.727
C461_07739
GtrA family protein; COG2246 Predicted membrane protein.
  
 
 0.547
C461_13856
Hypothetical protein; COG0392 Predicted integral membrane protein.
  
 
 0.543
C461_09437
Hypothetical protein; COG0550 Topoisomerase IA.
       0.501
C461_09392
COG0438 Glycosyltransferase.
  
 
 0.447
C461_09402
COG0438 Glycosyltransferase.
  
 
 0.444
C461_05462
COG1004 Predicted UDP-glucose 6-dehydrogenase.
 
  
 0.433
Your Current Organism:
Halorubrum aidingense
NCBI taxonomy Id: 1230454
Other names: H. aidingense JCM 13560, Halorubrum aidingense JCM 13560, Halorubrum sp. 31-hong
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.