STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C495_12869Signal peptide peptidase SppA, 36K type; COG0616 Periplasmic serine proteases (ClpP class). (331 aa)    
Predicted Functional Partners:
C495_12874
COG2237 Predicted membrane protein.
       0.701
C495_09095
Peptidase M50; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
     
 0.590
C495_12879
Universal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter protein; COG2102 Predicted ATPases of PP-loop superfamily.
       0.579
C495_04937
Binding-protein-dependent transport system inner membrane protein; COG0581 ABC-type phosphate transport system, permease component.
       0.570
C495_12864
Phosphoserine phosphatase; COG1340 Uncharacterized archaeal coiled-coil protein.
       0.542
C495_15227
Hypothetical protein.
  
    0.448
Your Current Organism:
Natronorubrum sulfidifaciens
NCBI taxonomy Id: 1230460
Other names: N. sulfidifaciens JCM 14089, Natronorubrum sp. AD2, Natronorubrum sulfidifaciens AD2, Natronorubrum sulfidifaciens JCM 14089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.