STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C207_045583-oxoacyl-[acyl-carrier protein] reductase; Required for the transposition of the insertion element. (420 aa)    
Predicted Functional Partners:
rne
rne/Rng family ribonuclease; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
    
 0.687
hisH
Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
    
  0.614
C207_00001
methionyl-tRNA formyltransferase.
  
     0.552
C207_03622
Tryptophan 2,3-dioxygenase.
  
     0.552
C207_06445
Formate dehydrogenase, gamma subunit.
  
     0.552
C207_06808
Type IV secretion system protein TrbL.
  
     0.552
C207_04557
Hypothetical protein.
       0.475
C207_02929
Transposase.
 
   
 0.466
C207_06676
Branched-chain amino acid transport system ATP-binding protein.
  
     0.462
C207_00002
methylated-DNA-[protein]-cysteine S-methyltransferase.
 
     0.445
Your Current Organism:
Bradyrhizobium sp. DFCI1
NCBI taxonomy Id: 1230476
Other names: B. sp. DFCI-1, Bradyrhizobium sp. DFCI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.