STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMI_0H03928GLAMI_0H03928g1_1. (608 aa)    
Predicted Functional Partners:
LAMI_0E14004G
LAMI_0E14004g1_1; Belongs to the peptidase C19 family.
   
 
 0.973
LAMI_0H16644G
LAMI_0H16644g1_1.
    
 0.902
LAMI_0H18448G
LAMI_0H18448g1_1.
    
 0.866
LAMI_0H12156G
Ubiquitin carboxyl-terminal hydrolase.
     
 0.676
LAMI_0E12552G
LAMI_0E12552g1_1.
    
 0.598
LAMI_0H00892G
LAMI_0H00892g1_1.
    
 0.598
LAMI_0H08350G
LAMI_0H08350g1_1.
    
 0.598
LAMI_0C10242G
LAMI_0C10242g1_1.
     
 0.588
LAMI_0D07118G
E3 ubiquitin-protein ligase.
    
 
 0.578
LAMI_0C07778G
LAMI_0C07778g1_1.
    
 0.559
Your Current Organism:
Lachancea mirantina
NCBI taxonomy Id: 1230905
Other names: CBS 11717, L. mirantina, Lachancea mirantina Pereira, Costa, Brasileiro, Rosa & Morais, 2011, Lachancea sp. CBS 11717, Lachancea sp. PJ-2012b, URM 5925
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.