STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_0636OpuCA. (435 aa)    
Predicted Functional Partners:
L248_0637
OpuCB.
 0.999
L248_0638
OpuCC.
 0.999
L248_0639
OpuCD.
 0.999
L248_2299
OpuCB.
 0.999
proV
OpuBA.
  
  
 
0.930
L248_2911
Hypothetical protein; ABC-type multidrug transport system, ATPase component.
 
    
0.858
L248_1549
Hypothetical protein; ABC-type antimicrobial peptide transport system, permease component.
 
      0.639
oppC-2
OppC.
 
      0.561
ugpC
UgpC; Belongs to the ABC transporter superfamily.
  
  
 
0.447
fbpC
FbpC; Belongs to the ABC transporter superfamily.
  
  
 
0.447
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.