STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAAraA; Catalyzes the conversion of L-arabinose to L-ribulose. (477 aa)    
Predicted Functional Partners:
araB
L-ribulokinase.
 
 
 0.992
araD
AraD.
 
 0.967
xynB
XynB; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.945
L248_2453
Xsa.
 
 
 0.936
L248_1068
Hypothetical protein.
  
 
 0.721
yxiA
YxiA; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.703
abfA
AbfA.
  
 
 0.685
rhaD
RhaD; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
  
 
 0.672
L248_2292
Hypothetical protein; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 
 0.672
L248_2454
alpha-N-arabinofuranosidase.
 
 
 0.652
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.