STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_1494Hypothetical protein. (334 aa)    
Predicted Functional Partners:
galK
GalK; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.895
L248_1495
Hypothetical protein.
     
 0.868
cobB
CobB.
   
 0.789
ssdA
SsdA.
  
 
 0.753
L248_2775
Hypothetical protein.
  
 
 0.739
L248_2990
Hypothetical protein.
  
 
 0.739
L248_1493
Hypothetical protein.
       0.700
mnaA
MnaA; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.687
adhE
Adh2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.650
adhE-2
Adh2.
  
 
 0.650
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.