STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_1667Hypothetical protein. (105 aa)    
Predicted Functional Partners:
L248_1665
Hypothetical protein.
 
     0.854
L248_1662
Hypothetical protein; DNA or RNA helicases of superfamily II.
 
     0.843
L248_1666
Hypothetical protein.
 
     0.836
L248_1663
Hypothetical protein.
 
     0.827
L248_1660
Hypothetical protein.
 
     0.797
L248_1668
Hypothetical protein.
       0.773
L248_1669
Hypothetical protein.
       0.773
L248_1670
Hypothetical protein.
       0.773
L248_1671
Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.773
L248_1672
Hypothetical protein.
       0.732
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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