Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| L248_0888 | L248_1729 | L248_0888 | L248_1729 | UPF0154 protein. | Site-specific DNA-methyltransferase (adenine-specific). | 0.714 |
| L248_0888 | nrnA | L248_0888 | L248_1736 | UPF0154 protein. | NrnA. | 0.703 |
| L248_0888 | recU | L248_0888 | L248_0342 | UPF0154 protein. | RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.769 |
| L248_1729 | L248_0888 | L248_1729 | L248_0888 | Site-specific DNA-methyltransferase (adenine-specific). | UPF0154 protein. | 0.714 |
| L248_1729 | nrnA | L248_1729 | L248_1736 | Site-specific DNA-methyltransferase (adenine-specific). | NrnA. | 0.689 |
| L248_1729 | recU | L248_1729 | L248_0342 | Site-specific DNA-methyltransferase (adenine-specific). | RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.623 |
| L248_1738 | cshB | L248_1738 | L248_1737 | Hypothetical protein. | CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.802 |
| L248_1738 | dinB | L248_1738 | L248_1734 | Hypothetical protein. | DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.618 |
| L248_1738 | nrnA | L248_1738 | L248_1736 | Hypothetical protein. | NrnA. | 0.670 |
| L248_1738 | ytoI | L248_1738 | L248_1735 | Hypothetical protein. | YtoI. | 0.678 |
| cshB | L248_1738 | L248_1737 | L248_1738 | CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | Hypothetical protein. | 0.802 |
| cshB | dinB | L248_1737 | L248_1734 | CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.786 |
| cshB | nrnA | L248_1737 | L248_1736 | CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | NrnA. | 0.751 |
| cshB | ytoI | L248_1737 | L248_1735 | CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | YtoI. | 0.707 |
| ctpA | nrnA | L248_0264 | L248_1736 | CtpA; Belongs to the peptidase S41A family. | NrnA. | 0.592 |
| cysH | nrnA | L248_2138 | L248_1736 | Phosphoadenosine phosphosulfate reductase. | NrnA. | 0.601 |
| dinB | L248_1738 | L248_1734 | L248_1738 | DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Hypothetical protein. | 0.618 |
| dinB | cshB | L248_1734 | L248_1737 | DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.786 |
| dinB | nrnA | L248_1734 | L248_1736 | DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | NrnA. | 0.769 |
| dinB | recJ | L248_1734 | L248_0439 | DinB; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | single-stranded-DNA-specific exonuclease. | 0.409 |
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