STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_2417Hypothetical protein. (542 aa)    
Predicted Functional Partners:
L248_2416
Hypothetical protein; ABC-type sugar transport system, permease component.
 
  0.970
yteP-3
YteP.
 
  0.949
L248_0565
Hypothetical protein; ABC-type sugar transport system, permease component.
 
  0.903
L248_1049
Hypothetical protein; ABC-type maltose transport systems, permease component.
 
  0.898
L248_0545
Hypothetical protein; ABC-type sugar transport system, permease component.
 
  0.878
lplC-2
LplC.
 
  0.857
yteP-2
YteP.
 
  0.852
lplB-2
LplB.
 
  0.850
L248_2957
Hypothetical protein.
 
  0.844
yteP
YteP.
 
  0.840
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.