STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_2612Hypothetical protein; Rhodanese-related sulfurtransferase. (143 aa)    
Predicted Functional Partners:
ybeY
Putative rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.932
rpsQ
RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal.
   
   0.917
L248_2606
Penicillin-binding protein 2B.
 
     0.905
mhqA
MhqA.
   
 
 0.903
rplQ
RplQ; Belongs to the bacterial ribosomal protein bL17 family.
  
   0.901
rplU
RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.899
L248_1781
FadD15.
   
   0.894
rplK
RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.890
rplM
RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.886
rplX
RplX; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
   
   0.880
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.