STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_2696Hypothetical protein; ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components. (538 aa)    
Predicted Functional Partners:
msbA
MsbA; Overlaps another CDS with the same product name.
 
 
 
0.736
comA
ComA.
 
 
 
0.675
pedD
PedD.
 
 
 
0.672
L248_2697
Hypothetical protein.
 
     0.638
L248_2061
ABC transporter B family member 13.
 
 
0.625
L248_1454
Hypothetical protein.
  
     0.616
L248_2817
Hypothetical protein.
  
 
 0.612
L248_0185
Putative ABC transporter ATP-binding protein.
 
 
0.608
L248_0084
ATP-binding cassette sub-family B member 5.
 
 
0.603
L248_0474
Hypothetical protein.
 
 
0.603
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.