Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| L248_2783 | L248_2785 | L248_2783 | L248_2785 | Hypothetical protein. | Atp7a. | 0.510 |
| L248_2783 | yfhQ | L248_2783 | L248_2784 | Hypothetical protein. | YfhQ; Adenine glycosylase active on G-A mispairs. | 0.746 |
| L248_2785 | L248_2783 | L248_2785 | L248_2783 | Atp7a. | Hypothetical protein. | 0.510 |
| L248_2785 | yfhQ | L248_2785 | L248_2784 | Atp7a. | YfhQ; Adenine glycosylase active on G-A mispairs. | 0.529 |
| L248_3003 | yfhQ | L248_3003 | L248_2784 | Hypothetical protein. | YfhQ; Adenine glycosylase active on G-A mispairs. | 0.509 |
| birA | exoA | L248_1770 | L248_1341 | BirA. | ExoA. | 0.843 |
| birA | nth | L248_1770 | L248_0344 | BirA. | Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.450 |
| birA | recJ | L248_1770 | L248_0439 | BirA. | single-stranded-DNA-specific exonuclease. | 0.448 |
| birA | yfhQ | L248_1770 | L248_2784 | BirA. | YfhQ; Adenine glycosylase active on G-A mispairs. | 0.521 |
| dnaN | exoA | L248_1977 | L248_1341 | DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for [...] | ExoA. | 0.994 |
| dnaN | polA | L248_1977 | L248_0037 | DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for [...] | PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.999 |
| dnaN | recJ | L248_1977 | L248_0439 | DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for [...] | single-stranded-DNA-specific exonuclease. | 0.655 |
| dnaN | yfhQ | L248_1977 | L248_2784 | DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for [...] | YfhQ; Adenine glycosylase active on G-A mispairs. | 0.852 |
| exoA | birA | L248_1341 | L248_1770 | ExoA. | BirA. | 0.843 |
| exoA | dnaN | L248_1341 | L248_1977 | ExoA. | DnaN; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for [...] | 0.994 |
| exoA | nth | L248_1341 | L248_0344 | ExoA. | Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.999 |
| exoA | polA | L248_1341 | L248_0037 | ExoA. | PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.988 |
| exoA | recJ | L248_1341 | L248_0439 | ExoA. | single-stranded-DNA-specific exonuclease. | 0.517 |
| exoA | yfhQ | L248_1341 | L248_2784 | ExoA. | YfhQ; Adenine glycosylase active on G-A mispairs. | 0.977 |
| nth | birA | L248_0344 | L248_1770 | Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | BirA. | 0.450 |
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