STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_2800Hypothetical protein. (442 aa)    
Predicted Functional Partners:
L248_1836
Hypothetical protein.
 
  
 0.922
L248_2485
Hypothetical protein; Type II restriction enzyme, methylase subunits.
 
  
 0.919
L248_2088
ATP-dependent Lon protease.
 
  
 0.889
L248_1838
Hypothetical protein.
  
  
 0.722
yloA
YloA.
  
  
 0.677
L248_1837
Hypothetical protein.
 
    0.591
L248_2487
Hypothetical protein.
  
    0.537
polA
PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.450
ilvE
IlvE.
  
    0.447
L248_3148
Hypothetical protein.
   
    0.437
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.