STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCPcaC. (106 aa)    
Predicted Functional Partners:
L248_2869
Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
 0.996
adhE
Adh2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.927
adhE-2
Adh2.
  
 
 0.927
L248_1026
Hypothetical protein.
  
 
 0.855
purB
PurB; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.741
budR
BudR; Belongs to the LysR transcriptional regulatory family.
     
 0.584
L248_1820
Hypothetical protein.
    
 0.561
yijO
YijO.
    
 0.561
accC
AccC.
  
 
  0.536
L248_1204
hydroxymethylglutaryl-CoA reductase.
  
 
 0.527
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.