STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacD-2LacD; Belongs to the aldolase LacD family. (338 aa)    
Predicted Functional Partners:
fruK
FruK; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
 
 0.943
pfkA
PfkA; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.885
L248_0306
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
 
 0.823
agaS
AgaS.
 
   
 0.735
L248_2054
Hypothetical protein.
  
 
  0.591
L248_2968
Hypothetical protein.
  
 
  0.583
L248_2697
Hypothetical protein.
  
 
  0.566
L248_0307
Hypothetical protein.
  
     0.562
ssdA
SsdA.
   
 
  0.533
L248_2339
Hypothetical protein.
    
  0.520
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.