STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L248_3138Hypothetical protein. (349 aa)    
Predicted Functional Partners:
L248_3141
Hypothetical protein.
 
 
 0.996
fbpC
FbpC; Belongs to the ABC transporter superfamily.
 
 
 0.995
L248_3140
Hypothetical protein.
 
 
 0.981
L248_1347
Hypothetical protein; ABC-type spermidine/putrescine transport system, permease component I.
 
 
 0.965
potA
PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.957
ade
Ade; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.
 
    0.872
L248_1348
Hypothetical protein; ABC-type spermidine/putrescine transport system, permease component II.
 
 
 0.832
ugpC
UgpC; Belongs to the ABC transporter superfamily.
 
  
 0.512
sbcC
SbcC.
    
 0.497
L248_2547
Hypothetical protein.
    
  0.487
Your Current Organism:
Lactobacillus shenzhenensis
NCBI taxonomy Id: 1231336
Other names: L. shenzhenensis LY-73, Lactobacillus shenzhenensis KACC 16878, Lactobacillus shenzhenensis LY-73, Lactobacillus sp. KACC 16878
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.