STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCGS_0988TRAP dicarboxylate transporter, DctM subunit. (420 aa)    
Predicted Functional Partners:
OCGS_0986
TRAP dicarboxylate transporter, DctP subunit, putative.
 
 
  0.992
OCGS_2526
Hypothetical protein.
 
    0.899
OCGS_2709
Hypothetical protein.
 
    0.897
OCGS_0987
Hypothetical protein.
 
  0.892
OCGS_2167
Putative ABC transporter periplasmic substrate-binding protein.
  
    0.780
OCGS_0989
Hypothetical protein.
       0.773
OCGS_0990
KynU; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.773
OCGS_0991
Hypothetical protein.
       0.697
OCGS_0992
Sulfatase family protein 8.
       0.697
OCGS_0015
TRAP transporter extracellular solute binding protein, family 7.
  
    0.672
Your Current Organism:
Oceaniovalibus guishaninsula
NCBI taxonomy Id: 1231392
Other names: O. guishaninsula JLT2003, Oceaniovalibus guishaninsula JLT2003
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