STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCGS_1225Periplasmic serine protease, DO/DeqQ family protein; Belongs to the peptidase S1C family. (486 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.840
OCGS_1021
Cytoplasmic sensor hybrid histidine kinase.
  
  
 0.785
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.737
OCGS_0278
Hypothetical protein.
   
 
  0.734
OCGS_1228
HflK protein; HflC and HflK could encode or regulate a protease.
 
 
 0.708
OCGS_1227
Protein hflC; HflC and HflK could regulate a protease.
 
 
 0.706
OCGS_2232
Catalase.
   
 0.698
OCGS_2822
Hypothetical protein.
   
 0.698
OCGS_2347
Putative membrane-associated zinc metalloprotease.
 
   
 0.679
OCGS_2678
Fused aldehyde dehydrogenase/enoyl-CoA hydratase.
    
 0.671
Your Current Organism:
Oceaniovalibus guishaninsula
NCBI taxonomy Id: 1231392
Other names: O. guishaninsula JLT2003, Oceaniovalibus guishaninsula JLT2003
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