STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCGS_2649Tripartite ATP-independent periplasmic (TRAP) C4-dicarboxylate transporter subunit DctQ. (149 aa)    
Predicted Functional Partners:
OCGS_2650
Hypothetical protein.
 
  0.995
OCGS_2648
Putative extracellular solute-binding protein.
 
    0.954
OCGS_0273
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.804
OCGS_1404
Hypothetical protein.
  
     0.747
OCGS_0906
Trap dicarboxylate family transporter, dctq subunit.
  
  
  0.696
OCGS_0025
TRAP transporter, DctQ subunit.
  
  
  0.671
OCGS_2651
Hypothetical protein.
       0.658
OCGS_2149
Hypothetical protein.
  
    0.655
OCGS_2647
Transcriptional regulator, MarR family.
 
     0.641
OCGS_1405
Hypothetical protein.
  
  0.611
Your Current Organism:
Oceaniovalibus guishaninsula
NCBI taxonomy Id: 1231392
Other names: O. guishaninsula JLT2003, Oceaniovalibus guishaninsula JLT2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.