STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCGS_2679Carnitine operon protein CaiE. (205 aa)    
Predicted Functional Partners:
OCGS_1629
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 0.943
OCGS_2804
Rubisco-like protein Rlp1.
    
 
 0.912
OCGS_2678
Fused aldehyde dehydrogenase/enoyl-CoA hydratase.
 
   
 0.849
OCGS_2677
Phenylacetic acid catabolic family protein.
     
 0.752
OCGS_2676
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
       0.736
OCGS_2673
phenylacetate-CoA oxygenase, PaaH subunit.
     
 0.682
OCGS_2674
phenylacetate-CoA oxygenase, PaaI subunit.
     
 0.678
OCGS_2675
Putative phenylacetic acid degradation protein.
     
 0.672
OCGS_2672
phenylacetate-CoA oxygenase, PaaG subunit.
     
 0.661
OCGS_2671
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.578
Your Current Organism:
Oceaniovalibus guishaninsula
NCBI taxonomy Id: 1231392
Other names: O. guishaninsula JLT2003, Oceaniovalibus guishaninsula JLT2003
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