STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAN54348.1Cytosine deaminase. (424 aa)    
Predicted Functional Partners:
GAN54345.1
Pyrimidine precursor biosynthesis enzyme thi3.
 
     0.918
GAN54347.1
Nitrate/sulfonate/bicarbonate transporter permease protein.
    0.870
GAN54349.1
Cocaine esterase.
 
     0.855
GAN54346.1
ABC transporter ATP-binding protein.
 
     0.842
GAN54350.1
Hypothetical protein.
 
     0.838
GAN54327.1
FAD-linked oxidoreductase.
  
     0.774
GAN54351.1
Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB.
       0.773
GAN54353.1
FAD linked oxidase.
  
     0.773
GAN54343.1
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein.
 
     0.755
GAN53850.1
Hypothetical protein.
  
 
  0.731
Your Current Organism:
Tanticharoenia sakaeratensis
NCBI taxonomy Id: 1231623
Other names: T. sakaeratensis NBRC 103193, Tanticharoenia sakaeratensis BCC 15772, Tanticharoenia sakaeratensis NBRC 103193
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