STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAN54463.1ABC transporter. (220 aa)    
Predicted Functional Partners:
GAN54461.1
Binding-protein-dependent transporters inner membrane component.
 
  0.950
GAN54462.1
Binding-protein-dependent transport systems inner membrane component.
 
 
  0.948
GAN54019.1
Nitrate/nitrite transporter ATP-binding protein NtrA.
 
 0.936
GAN54347.1
Nitrate/sulfonate/bicarbonate transporter permease protein.
 
 
  0.841
GAN54459.1
Binding-protein-dependent transport systems inner membrane component.
  
 
  0.810
GAN54406.1
Binding-protein-dependent transport systems inner membrane component.
 
 
  0.801
GAN54831.1
Binding-protein-dependent transport systems inner membrane component.
  
 
  0.796
GAN54460.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.773
GAN55644.1
Spermidine/putrescine transport system permease protein potB.
   
  0.715
GAN54201.1
ABC transporter permease.
 
 
  0.714
Your Current Organism:
Tanticharoenia sakaeratensis
NCBI taxonomy Id: 1231623
Other names: T. sakaeratensis NBRC 103193, Tanticharoenia sakaeratensis BCC 15772, Tanticharoenia sakaeratensis NBRC 103193
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