STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAN54946.1Membrane-bound lytic murein transglycosylase. (340 aa)    
Predicted Functional Partners:
GAN54944.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
   
 0.865
GAN54945.1
Rare lipoprotein A.
 
   
 0.848
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.810
GAN52865.1
Hypothetical protein; Belongs to the UPF0260 family.
     0.697
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.666
GAN54939.1
Octanoyltransferase.
       0.661
GAN54940.1
Sec-independent protein translocase protein TatD.
       0.659
GAN54942.1
DNA polymerase III subunit delta'.
       0.642
GAN54947.1
Hypothetical protein.
       0.596
glk
Glucokinase; Belongs to the bacterial glucokinase family.
  
  
  0.553
Your Current Organism:
Tanticharoenia sakaeratensis
NCBI taxonomy Id: 1231623
Other names: T. sakaeratensis NBRC 103193, Tanticharoenia sakaeratensis BCC 15772, Tanticharoenia sakaeratensis NBRC 103193
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