STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAT18886.1Transcriptional regulator TetR. (228 aa)    
Predicted Functional Partners:
BAT18887.1
FAD binding monooxygenase.
 
     0.830
BAT18954.1
Transcriptional regulator TetR; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19.
  
     0.551
BAT18434.1
NAD dependent epimerase/dehydratase.
  
     0.485
BAT18828.1
Oxidoreductase/dehydrogenase.
  
     0.469
BAT18885.1
Metallophosphoesterase.
       0.465
BAT18829.1
Transcriptional regulator TetR; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19; Different start site was predicted by ab initio prediction:glimmer3:3.02.
  
     0.450
BAT18435.1
Transcriptional regulator XRE.
  
     0.423
BAT20402.1
Two component hybrid sensor histidine kinase and transcriptional regulator.
    
 
 0.411
BAT20407.1
Polyketide synthase.
     
 0.410
BAT21021.1
Oxidoreductase/dehydrogenase.
  
     0.403
Your Current Organism:
Asaia bogorensis
NCBI taxonomy Id: 1231624
Other names: A. bogorensis NBRC 16594, Asaia bogorensis 71, Asaia bogorensis JCM 10569, Asaia bogorensis LMG 21650, Asaia bogorensis MTCC 4041, Asaia bogorensis NBRC 16594
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