STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAT18895.1Type I pili subunit CsuA/B protein; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e. (176 aa)    
Predicted Functional Partners:
BAT18894.1
Chaperone protein.
 
 
 0.965
BAT18893.1
Type I pili usher protein CsuD; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e.
 
  
 0.884
BAT18896.1
Spore coat U; Different start site was predicted by ab initio prediction:glimmer3:3.02.
      
0.768
BAT20780.1
FAD-dependent gluconate 2-dehydrogenase cytochrome c; Different start site was predicted by ab initio prediction:glimmer3:3.02.
  
     0.535
BAT18664.1
FAD dependent sorbitol dehydrogenase cytochrome c; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e.
  
     0.453
BAT20265.1
TonB-dependent siderophore receptor; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19; Different start site was predicted by ab initio prediction:glimmer3:3.02.
  
     0.431
BAT20778.1
FAD-dependent gluconate 2-dehydrogenase small subunit.
  
     0.431
BAT18892.1
Spore coat protein U domain protein.
       0.426
Your Current Organism:
Asaia bogorensis
NCBI taxonomy Id: 1231624
Other names: A. bogorensis NBRC 16594, Asaia bogorensis 71, Asaia bogorensis JCM 10569, Asaia bogorensis LMG 21650, Asaia bogorensis MTCC 4041, Asaia bogorensis NBRC 16594
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