STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAT18929.1Acetyltransferase; Different start site was predicted by ab initio prediction:glimmer3:3.02. (172 aa)    
Predicted Functional Partners:
BAT19923.1
Phosphatase; Different start site was predicted by ab initio prediction:glimmer3:3.02.
  
     0.710
BAT18928.1
ABC transporter.
      0.687
BAT20144.1
Outer membrane protein OmpH/Skp.
  
     0.643
BAT18550.1
Uncharacterized protein conserved in bacteria DUF2272 domain protein.
  
     0.609
BAT19313.1
Hypothetical protein.
  
     0.603
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.554
BAT20407.1
Polyketide synthase.
 
  
 0.553
mreD
Rod shape-determining protein MreD.
  
     0.525
BAT19548.1
Endonuclease/Exonuclease/phosphatase family domain protein; Different start site was predicted by ab initio prediction:glimmer3:3.02.
  
     0.525
BAT18553.1
WD domain, G-beta repeat domain protein.
  
     0.523
Your Current Organism:
Asaia bogorensis
NCBI taxonomy Id: 1231624
Other names: A. bogorensis NBRC 16594, Asaia bogorensis 71, Asaia bogorensis JCM 10569, Asaia bogorensis LMG 21650, Asaia bogorensis MTCC 4041, Asaia bogorensis NBRC 16594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.