STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutT8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family. (320 aa)    
Predicted Functional Partners:
BAT20165.1
Ring-hydroxylating dioxygenase ferredoxin subunit; Different start site was predicted by ab initio prediction:glimmer3:3.02.
       0.773
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.755
BAT20407.1
Polyketide synthase.
  
  
 0.587
BAT20041.1
Methylated DNA--protein cysteine methyltransferase.
     
 0.551
BAT20422.1
acetyl-CoA synthetase.
  
  
 0.550
BAT20906.1
Transcriptional regulator MarR; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e.
  
 
 0.544
BAT19939.1
Universal stress protein UspA.
  
  
 0.543
BAT20628.1
Pyruvate ferredoxin/flavodoxin oxidoreductase; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e.
     
 0.530
BAT20015.1
Aminotransferase/pleiotropic regulatory protein DegT/DnrJ/EryC29/StrS; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.521
BAT18584.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Different start site was predicted by ab initio prediction:glimmer3:3.02; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.519
Your Current Organism:
Asaia bogorensis
NCBI taxonomy Id: 1231624
Other names: A. bogorensis NBRC 16594, Asaia bogorensis 71, Asaia bogorensis JCM 10569, Asaia bogorensis LMG 21650, Asaia bogorensis MTCC 4041, Asaia bogorensis NBRC 16594
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