STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAT20431.1Fe3+ siderophore receptor; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e. (294 aa)    
Predicted Functional Partners:
BAT20429.1
Proton channel/TonB-dependent biopolymer transporter MotA/TolQ/ExbB.
 
 
 0.953
BAT20430.1
TonB-dependent biopolymer transport protein ExbD/TolR.
 
 
 0.944
BAT19881.1
TonB-dependent heme/hemoglobin receptor; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19.
 
 
 0.765
BAT20428.1
Oxygenase 2OG-Fe(II)/hydroxylase.
 
    0.714
BAT20417.1
TonB-dependent outer membrane siderophore receptor; Different start site was predicted by ab initio prediction:GeneMarkS:4.6e.
 
   
 0.685
BAT20993.1
TonB-dependent ferric iron siderophore receptor.
  
 
 0.651
BAT20904.1
Fe3+ siderophore receptor.
 
 
 0.607
BAT20947.1
Fe3+ siderophore receptor; Different start site was predicted by ab initio prediction:glimmer3:3.02.
 
 
 0.587
BAT18463.1
TonB-dependent biopolymer transport protein ExbD/TolR; Different start site was predicted by ab initio prediction:MetaGeneAnnotator:2008/8/19.
  
 
 0.585
tolR
TonB-dependent biopolymer transport protein ExbD/TolR.
  
 
 0.585
Your Current Organism:
Asaia bogorensis
NCBI taxonomy Id: 1231624
Other names: A. bogorensis NBRC 16594, Asaia bogorensis 71, Asaia bogorensis JCM 10569, Asaia bogorensis LMG 21650, Asaia bogorensis MTCC 4041, Asaia bogorensis NBRC 16594
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